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tcplfit2: Concentration-Response Modeling of HTS or Transcriptomics Data

Performs the basic concentration response curve fitting used in the 'tcpl' package. It is a substitute for the original tcplFit() function (and sub-functions) and allows a wider variety of concentration-response models. All of the models included in the 'BMDExpress' package are now part of this package, and the output includes a calculation of the bmd (Benchmark Dose or concentration) value.

Version: 0.1.6
Depends: R (≥ 3.5.0)
Imports: stats, methods, numDeriv, RColorBrewer, stringr
Suggests: knitr, rmarkdown, stringi, DT, data.table, tcpl, prettydoc
Published: 2023-10-10
Author: Thomas Sheffield [aut], Richard Judson [ctb], Jason Brown [ctb, cre], Sarah E. Davidson [ctb], Zhihui Zhao [ctb]
Maintainer: Jason Brown <brown.jason at epa.gov>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README NEWS
CRAN checks: tcplfit2 results

Documentation:

Reference manual: tcplfit2.pdf
Vignettes: tcplfit2_vignette

Downloads:

Package source: tcplfit2_0.1.6.tar.gz
Windows binaries: r-devel: tcplfit2_0.1.6.zip, r-release: tcplfit2_0.1.6.zip, r-oldrel: tcplfit2_0.1.6.zip
macOS binaries: r-release (arm64): tcplfit2_0.1.6.tgz, r-oldrel (arm64): tcplfit2_0.1.6.tgz, r-release (x86_64): tcplfit2_0.1.6.tgz, r-oldrel (x86_64): tcplfit2_0.1.6.tgz
Old sources: tcplfit2 archive

Reverse dependencies:

Reverse imports: tcpl

Linking:

Please use the canonical form https://CRAN.R-project.org/package=tcplfit2 to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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