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calcIBD
objects with an identical number of genotypes is fixed.plot
function is fixed. The “singleGeno” plots now show the correct probabilities.writeIBDs
) and reading IBD (readIBDs
) probabilities to a custom format have been added. The format is explained in a new vignette vignette("IBDFileFormat", package = "statgenIBD")
.IBDprob
, a plot showing the mean coverage of each parent across the population (plotType = "meanProbs"
) and a plot showing the total coverage of each parent (plotType = "totalCoverage"
).calcIBD
no longer have a leading “p”.readRabbit
, for reading output from the RABBIT software for computing IBDs for complex crosses, is moved here from statgenMPP
.IBDprob
by specifying plotType = "pedigree"
.plotType
that can have values “singleGeno”, for the original plot, and “allGeno” for a new plot showing probabilities for all genotypes in a single plot.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.