splikit: Analysing RNA Splicing in Single-Cell RNA Sequencing Data
Provides analysis of high-dimensional single-cell splicing data. Offers a framework to extract and work with ratio-based data structures derived from single-cell RNA sequencing experiments. Provides both a modern 'R6' object-oriented interface and direct matrix manipulation functions. Core functionalities are implemented in 'C++' via 'Rcpp' to ensure high performance and scalability on large datasets.
| Version: | 2.3.1 |
| Depends: | R (≥ 4.1.0) |
| Imports: | Matrix, data.table, methods, stats, Rcpp, R6 |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | testthat (≥ 3.0.0), knitr, rmarkdown, ggplot2 |
| Published: | 2026-05-13 |
| DOI: | 10.32614/CRAN.package.splikit (may not be active yet) |
| Author: | Arsham Mikaeili Namini
 [aut, cre] |
| Maintainer: | Arsham Mikaeili Namini <arsham.mikaeilinamini at mail.mcgill.ca> |
| BugReports: | https://github.com/csglab/splikit/issues |
| License: | MIT + file LICENSE |
| URL: | https://csglab.github.io/splikit/, https://github.com/csglab/splikit |
| NeedsCompilation: | yes |
| Materials: | README, NEWS |
| CRAN checks: | splikit results |
Documentation:
| Reference manual: | splikit.html , splikit.pdf |
| Vignettes: |
STARsolo Processing Guide for Splicing Analysis (source) Methods Overview (source) Splikit Manual for Single-Cell Splicing Analysis (source) |
Downloads:
| Package source: | splikit_2.3.1.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): splikit_2.3.1.tgz, r-oldrel (arm64): splikit_2.3.1.tgz, r-release (x86_64): splikit_2.3.1.tgz, r-oldrel (x86_64): splikit_2.3.1.tgz |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=splikit to link to this page.