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Analysis of species limits and DNA barcoding data. Included are functions for generating important summary statistics from DNA barcode data, assessing specimen identification efficacy, testing and optimizing divergence threshold limits, assessment of diagnostic nucleotides, and calculation of the probability of reciprocal monophyly. Additionally, a sliding window function offers opportunities to analyse information across a gene, often used for marker design in degraded DNA studies. Further information on the package has been published in Brown et al (2012) <doi:10.1111/j.1755-0998.2011.03108.x>.
| Version: | 1.5.0 |
| Imports: | ape, pegas, graphics, stats, utils |
| Suggests: | testthat |
| Published: | 2018-02-16 |
| Author: | Samuel Brown, Rupert Collins, Stephane Boyer, Marie-Caroline Lefort, Jagoba Malumbres-Olarte, Cor Vink, Rob Cruickshank |
| Maintainer: | Rupert A. Collins <rupertcollins at gmail.com> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Citation: | spider citation info |
| Materials: | README NEWS |
| CRAN checks: | spider results |
| Reference manual: | spider.pdf |
| Package source: | spider_1.5.0.tar.gz |
| Windows binaries: | r-devel: spider_1.5.0.zip, r-release: spider_1.5.0.zip, r-oldrel: spider_1.5.0.zip |
| macOS binaries: | r-release (arm64): spider_1.5.0.tgz, r-oldrel (arm64): spider_1.5.0.tgz, r-release (x86_64): spider_1.5.0.tgz, r-oldrel (x86_64): spider_1.5.0.tgz |
| Old sources: | spider archive |
| Reverse imports: | NicheBarcoding |
| Reverse suggests: | quiddich |
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These binaries (installable software) and packages are in development.
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