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snpAIMeR: Assess the Diagnostic Power of Genomic Marker Combinations
Population genetics package for designing diagnostic panels.
Candidate markers, marker combinations, and different panel sizes are
assessed for how well they can predict the source population of known
samples. Requires a genotype file of candidate markers in STRUCTURE format.
Methods for population cross-validation are described in Jombart (2008)
<doi:10.1093/bioinformatics/btn129>.
| Version: |
2.1.1 |
| Depends: |
R (≥ 2.10) |
| Imports: |
adegenet, doParallel, dplyr, forcats, foreach, ggplot2, graphics, magrittr, parallel, readr, tidyr, utils, withr, yaml |
| Suggests: |
testthat (≥ 3.0.0) |
| Published: |
2024-02-20 |
| Author: |
Kim Vertacnik 
[cre, aut],
Oksana Vernygora
[aut],
Julian Dupuis
[aut] |
| Maintainer: |
Kim Vertacnik <kim.vertacnik at mailbox.org> |
| Contact: |
Kim Vertacnik <kim.vertacnik@mailbox.org> or Julian Dupuis
<julian.dupuis@uky.edu> |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/OksanaVe/snpAIMeR |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
snpAIMeR results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=snpAIMeR
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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