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SEGUID v2: Checksums for Linear, Circular, Single- and Double-Stranded Biological Sequences

This R package, seguid, implements SEGUID v2 together with the original SEGUID algorithm.

Examples

Single-stranded DNA

> library(seguid)

## Linear single-stranded DNA
> lsseguid("TATGCCAA")
[1] "lsseguid=EevrucUNYjqlsxrTEK8JJxPYllk"

## Linear single-stranded DNA
> lsseguid("AATATGCC")
[1] "lsseguid=XsJzXMxgv7sbpqIzFH9dgrHUpWw"

## Circular single-stranded DNA
> csseguid("TATGCCAA")
[1] "csseguid=XsJzXMxgv7sbpqIzFH9dgrHUpWw"

## Same rotating two basepairs
> csseguid("GCCAATAT")
[1] "csseguid=XsJzXMxgv7sbpqIzFH9dgrHUpWw"

Double-stranded DNA

> library(seguid)

## Linear double-stranded DNA
> ldseguid("AATATGCC", "GGCATATT")
[1] "cdseguid=dUxN7YQyVInv3oDcvz8ByupL44A"

## Same swapping Watson and Crick 
> ldseguid("GGCATATT", "AATATGCC")
[1] "cdseguid=dUxN7YQyVInv3oDcvz8ByupL44A"

## Circular double-stranded DNA
> cdseguid("TATGCCAA", "TTGGCATA")
[1] "cdseguid=dUxN7YQyVInv3oDcvz8ByupL44A"

## Same swapping Watson and Crick 
> cdseguid("TTGGCATA", "TATGCCAA")
[1] "cdseguid=dUxN7YQyVInv3oDcvz8ByupL44A"

## Same rotating two basepairs (= minimal rotation by Watson)
> cdseguid("AATATGCC", "GGCATATT")
[1] "cdseguid=dUxN7YQyVInv3oDcvz8ByupL44A"

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.