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Author & Maintainer: Yuyao Song ysong@ebi.ac.uk
Note main branch version is compatible with Seurat and SeuratObject >= V5.0. If you are still using V4.0, please go to release scGOclust_V0.1.3.
First create the conda environment. Mamba is recommended as a faster alternative for conda.
conda env create -f scGOclust_conda_7Dec2022.yml
Then, open R under this environment, and install several packages not in conda:
remotes::install_github('satijalab/seurat-wrappers'), install.packages("pheatmap", "slanter")
Finally, install scGOclust from GitHub:
devtools::install_github("Papatheodorou-Group/scGOclust", ref = "main")
This package operates on pairs of Seurat objects
Refer to vignettes for usage examples
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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