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The current version of salmonMSE package is available on CRAN.

1.0.0

salmonMSE projections

• SOM@Bio@p_female parameter can now be age-specific. Intended for cases where older spawners are predominantly female.
• Fix markdown reporting for projections
• If release target is exceeded in custom brood rule, projection will proportionally reduce broodtake to return to target
• Fix calculation in freshwater survival when habitat features are used
• Hard code in openMSE historical period to 2 real years. Historical reconstruction no longer supported.
• M vector now reduce to length maxage-1
• Allow NO removals at the spawning grounds (facilitates in-river fishery operations)
• Add compare function to generate markdown report to compare several model runs

Conditioning model

• Allow NAs in target population escapement time series in likelihood
• Conditioning model reports realized productivity (adults/spawner) annually with time-varying maturity and M
• Add initial hatchery production assumption
• Add likelihood for observed pHOS (by calendar year or brood year)
• Export CM plotting functions
• Allow estimation of finitPT and finitT (initial fishing mortality), but likely slows down MCMC convergence
• Allow initial population to be specified by spawn_init (total spawners) and pHOS_init (fraction hatchery-origin)

Other

• Decision tables and tradeoff figures can now be a grid
• Remove stats::uniroot import for compatibility with RTMB 1.9

0.1.0

• Initial CRAN release

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.