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Implementation of dependent discrete models (with reversible jump MCMC) derived from 'BayesTraits' V5.0.3 <https://github.com/AndrewPMeade/BayesTraits-Release/tree/Release>. Original software copyright Andrew Meade and contributors, distributed under GPL-3. Modifications for this package by Vivian G. Li <liguo.vivian@gmail.com>. The following articles should be referenced when using this package: Pagel, M., A. Meade and D. Barker (2004) "Bayesian estimation of ancestral character states on phylogenies" <doi:10.1080/10635150490522232>; Pagel, M. (1994) "Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters" <doi:10.1098/rspb.1994.0006>; Pagel, M. and A. Meade (2006) "Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo" <doi:10.1086/503444>.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.5) |
| Imports: | ape, phangorn, expm, stats |
| Published: | 2026-06-23 |
| DOI: | 10.32614/CRAN.package.rphylo |
| Author: | Vivian G. Li [aut, cre], Andrew Meade [ctb] (Original 'BayesTraits' implementation), Mark Pagel [ctb] (Original 'BayesTraits' implementation) |
| Maintainer: | Vivian G. Li <liguo.vivian at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Citation: | rphylo citation info |
| Materials: | README |
| CRAN checks: | rphylo results |
| Reference manual: | rphylo.html , rphylo.pdf |
| Package source: | rphylo_0.1.1.tar.gz |
| Windows binaries: | r-devel: rphylo_0.1.1.zip, r-release: rphylo_0.1.1.zip, r-oldrel: rphylo_0.1.1.zip |
| macOS binaries: | r-release (arm64): rphylo_0.1.1.tgz, r-oldrel (arm64): rphylo_0.1.1.tgz, r-release (x86_64): rphylo_0.1.1.tgz, r-oldrel (x86_64): rphylo_0.1.1.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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