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Originally as an R version of Preseq <doi:10.1038/nmeth.2375>, the package has extended its functionality to predict the r-species accumulation curve (r-SAC), which is the number of species represented at least r times as a function of the sampling effort. When r = 1, the curve is known as the species accumulation curve, or the library complexity curve in high-throughput genomic sequencing. The package includes both parametric and nonparametric methods, as described by Deng C, et al. (2018) <doi:10.48550/arXiv.1607.02804>.
| Version: | 4.0.0 |
| Imports: | polynom, graphics, stats |
| Published: | 2018-06-27 |
| Author: | Chao Deng, Timothy Daley and Andrew D. Smith |
| Maintainer: | Chao Deng <chaodeng at usc.edu> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Citation: | preseqR citation info |
| Materials: | README |
| CRAN checks: | preseqR results |
| Reference manual: | preseqR.pdf |
| Package source: | preseqR_4.0.0.tar.gz |
| Windows binaries: | r-devel: preseqR_4.0.0.zip, r-release: preseqR_4.0.0.zip, r-oldrel: preseqR_4.0.0.zip |
| macOS binaries: | r-release (arm64): preseqR_4.0.0.tgz, r-oldrel (arm64): preseqR_4.0.0.tgz, r-release (x86_64): preseqR_4.0.0.tgz, r-oldrel (x86_64): preseqR_4.0.0.tgz |
| Old sources: | preseqR archive |
| Reverse imports: | ATACseqQC, scRecover |
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These binaries (installable software) and packages are in development.
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