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Gene-based association tests using the actual impurity reduction (AIR) variable importance. The function aggregates AIR importance measures from a group of SNPs or probes and outputs a p-value for each gene. The procedures builds upon the method described in <doi:10.1093/Bioinformatics/Bty373> and will be published soon.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.3.1), EmpiricalBrownsMethod (≥ 1.6.0), Hmisc (≥ 4.1) |
| Imports: | stats, ranger |
| Published: | 2018-07-30 |
| Author: | Stefano Nembrini |
| Maintainer: | Stefano Nembrini <stefanonembrini at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | poolVIM results |
| Reference manual: | poolVIM.pdf |
| Package source: | poolVIM_1.0.0.tar.gz |
| Windows binaries: | r-devel: poolVIM_1.0.0.zip, r-release: poolVIM_1.0.0.zip, r-oldrel: poolVIM_1.0.0.zip |
| macOS binaries: | r-release (arm64): poolVIM_1.0.0.tgz, r-oldrel (arm64): poolVIM_1.0.0.tgz, r-release (x86_64): poolVIM_1.0.0.tgz, r-oldrel (x86_64): poolVIM_1.0.0.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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