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The Molecular Signatures Database ('MSigDB') is one of the most widely used and comprehensive databases of gene sets for performing gene set enrichment analysis <doi:10.1016/j.cels.2015.12.004>. The 'msig' package provides you with powerful, easy-to-use and flexible query functions for the 'MsigDB' database. There are 2 query modes in the 'msig' package: online query and local query. Both queries contain 2 steps: gene set name and gene. The online search is divided into 2 modes: registered search and non-registered browse. For registered search, email that you registered should be provided. Local queries can be made from local database, which can be updated by msig_update() function.
| Version: | 1.0 |
| Depends: | R (≥ 4.1.0) |
| Imports: | do, rvest, xml2, set, plyr, httr, jsonlite, utils, kableExtra, tmcn, crayon, dplyr, stringr, sqldf |
| Published: | 2021-06-29 |
| Author: | Jing Zhang [aut, cre], Zhi Jin [aut] |
| Maintainer: | Jing Zhang <zj391120 at 163.com> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| CRAN checks: | msig results |
| Reference manual: | msig.pdf |
| Package source: | msig_1.0.tar.gz |
| Windows binaries: | r-devel: msig_1.0.zip, r-release: msig_1.0.zip, r-oldrel: msig_1.0.zip |
| macOS binaries: | r-release (arm64): msig_1.0.tgz, r-oldrel (arm64): msig_1.0.tgz, r-release (x86_64): msig_1.0.tgz, r-oldrel (x86_64): msig_1.0.tgz |
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These binaries (installable software) and packages are in development.
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