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mppR is an R package to perform QTL analysis of experimental multi-parent populations. The population must be composed of crosses between a set of at least three parents (e.g. factorial design, ‘diallel’, or nested association mapping). The functions cover data processing, QTL detection, and results visualization.
mppR has two different branches: “master” and “mppR_CRAN”. The “master” branch allows to perform MPP mixed model QTL detection calling the asreml-R package and function parent_cluster.mppData that call the archived R package clusthaplo for parent clustering. The branch “mppR_CRAN” do not contain the mixed models and the call to clusthaplo.
devtools::install_github("vincentgarin/mppR", ref = "master")
See the two vignettes attached to the package.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.