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moveHMM

An R package for analysing animal movement with hidden Markov models.

Get started with the vignettes:

• Guide to using moveHMM
• moveHMM workflow: wild haggis analysis
• Choosing starting values in moveHMM

Installation instructions

Stable release

The package is available on CRAN. To install it from CRAN, you can use the following command:

install.packages("moveHMM")

Install from Github

To install the latest (unstable) version of the package from Github:

devtools::install_github("TheoMichelot/moveHMM", build_vignettes = TRUE)

References

Michelot, T., Langrock, R., Patterson, T.A. (2016). moveHMM: An R package for analysing animal movement data using hidden Markov models. Methods in Ecology and Evolution. 7(11), 1308-1315.

Langrock, R., King, R., Matthiopoulos, J., Thomas, L., Fortin, D., & Morales, J. M. (2012). Flexible and practical modeling of animal telemetry data: hidden Markov models and extensions. Ecology, 93(11), 2336-2342.

Patterson, T. A., Basson, M., Bravington, M. V., & Gunn, J. S. (2009). Classifying movement behaviour in relation to environmental conditions using hidden Markov models. Journal of Animal Ecology, 78(6), 1113-1123.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.