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Functions for fitting various models to capture-recapture data including mixed-effects Cormack-Jolly-Seber(CJS) and multistate models and the multi-variate state model structure for survival estimation and POPAN structured Jolly-Seber models for abundance estimation. There are also Hidden Markov model (HMM) implementations of CJS and multistate models with and without state uncertainty and a simulation capability for HMM models.
| Version: | 1.2.8 |
| Depends: | R (≥ 3.5.0), lme4, methods, parallel |
| Imports: | graphics, stats, utils, R2admb, truncnorm, coda, Matrix, numDeriv, expm, Rcpp (≥ 0.9.13), TMB, optimx (≥ 2013.8.6), data.table, knitr, kableExtra, bookdown |
| LinkingTo: | Rcpp |
| Suggests: | ggplot2 |
| Published: | 2023-10-19 |
| Author: | Jeff Laake, Devin Johnson, Paul Conn, example for simHMM from Jay Rotella |
| Maintainer: | Jeff Laake <jefflaake at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| SystemRequirements: | ADMB version 11 <http://admb-project.org/> for use.admb=TRUE; see readme.txt |
| Citation: | marked citation info |
| Materials: | NEWS |
| In views: | Environmetrics |
| CRAN checks: | marked results |
| Reference manual: | marked.pdf |
| Vignettes: |
"marked Package Vignette" |
| Package source: | marked_1.2.8.tar.gz |
| Windows binaries: | r-devel: marked_1.2.8.zip, r-release: marked_1.2.8.zip, r-oldrel: marked_1.2.8.zip |
| macOS binaries: | r-release (arm64): marked_1.2.8.tgz, r-oldrel (arm64): marked_1.2.8.tgz, r-release (x86_64): marked_1.2.8.tgz, r-oldrel (x86_64): marked_1.2.8.tgz |
| Old sources: | marked archive |
| Reverse imports: | RWildbook |
| Reverse suggests: | FSA |
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These binaries (installable software) and packages are in development.
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