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locuszoomr: Gene Locus Plot with Gene Annotations
Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots.
| Version: |
0.3.0 |
| Depends: |
R (≥ 3.5) |
| Imports: |
AnnotationFilter, BiocGenerics, cowplot, dplyr, ensembldb, GenomeInfoDb, GenomicRanges, gggrid, ggplot2, ggrepel, graphics, grDevices, grid, IRanges, LDlinkR, memoise, plotly, rlang, rtracklayer, zoo |
| Suggests: |
AnnotationHub, EnsDb.Hsapiens.v75, knitr, rmarkdown |
| Published: |
2024-04-16 |
| Author: |
Myles Lewis  [aut,
cre] |
| Maintainer: |
Myles Lewis <myles.lewis at qmul.ac.uk> |
| BugReports: |
https://github.com/myles-lewis/locuszoomr/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://github.com/myles-lewis/locuszoomr |
| NeedsCompilation: |
no |
| Language: |
en-gb |
| Materials: |
README NEWS |
| CRAN checks: |
locuszoomr results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=locuszoomr
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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