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limorhyde2 0.1.0

• Changed default for credible interval mass to 0.9.

limorhyde2 0.0.13

• Fixed getExpectedMeas() for single condition and no covariates.

limorhyde2 0.0.12

• Added isAlreadyInParallel() function that checks if you are already running something in parallel.
• Added check to getRhythmStats() to prevent running in parallel if already in parallel.

limorhyde2 0.0.11

• Fixed mergeMeasMeta() for RNA-seq data.

limorhyde2 0.0.10

• Matched styling to lab standards.

limorhyde2 0.0.9

• Enabled spline fit with fewer knots and customizable degree.

limorhyde2 0.0.8

• Matched style to lab standard.

limorhyde2 0.0.7

• Made data smaller and examples faster.

limorhyde2 0.0.6

• Switched to using updated ashr from CRAN.

limorhyde2 0.0.4

• Added more stringent checking for correspondence between measurements matrix and metadata.

limorhyde2 0.0.3

• Made mash silent.
• Added checking for parallel backend, to avoid warning messages.

limorhyde2 0.0.2

• Moved data to data/, to make examples and vignettes simpler.
• Added examples.

limorhyde2 0.0.1

• Updated vignette for analyzing RNA-seq data.

limorhyde2 0.0.0.9033

• Renamed mean_value to mesor and added differential rhythm statistics for mean mesor and mean amp.

limorhyde2 0.0.0.9032

• Added differential rhythm statistic diff_rhy_dist.

limorhyde2 0.0.0.9031

• Cleaned up calculation of credible intervals for rhythm amplitudes.

limorhyde2 0.0.0.9030

• Updated model parameterization and mashing to treat all conditions fairly.

limorhyde2 0.0.0.9029

• Updated calculation of credible intervals for rhythm amplitudes.

limorhyde2 0.0.0.9028

• Added vignette for RNA-seq data.

limorhyde2 0.0.0.9027

• Added ability to fit models using DESeq2.

limorhyde2 0.0.0.9026

• Made calculation of rms-based stats optional.
• Simplified tests to use snapshotting.

limorhyde2 0.0.0.9025

• Changed assertLogical() to assertFlag() for checking inputs.

limorhyde2 0.0.0.9024

• Fixed vignette building on Windows machines

limorhyde2 0.0.0.9023

• Fixed factor weirdness between R versions

limorhyde2 0.0.0.9022

• Output for getDiffRhythmStats() now includes all pairs of conditions by default

limorhyde2 0.0.0.9021

• Fixed bug so getDiffRhythmStats uses all shifted models

limorhyde2 0.0.0.9020

• Replaced globalVariables() with assigning variables to NULL in each function

limorhyde2 0.0.0.9019

• Clarified wording in vignettes

limorhyde2 0.0.0.9018

• Added function to merge measurements and metadata
• Added vignettes

limorhyde2 0.0.0.9017

• Fixed bug in getStatsIntervals

limorhyde2 0.0.0.9016

• Cleaned up logic around nKnots for cosinor
• Fixed setting attributes for data.tables
• Fixed input check in getDiffRhythmStats

limorhyde2 0.0.0.9015

• Revamped input checking to use the checkmate package

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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