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kibior: A Simple Data Management and Sharing Tool

An interface to store, retrieve, search, join and share datasets, based on Elasticsearch (ES) API. As a decentralized, FAIR and collaborative search engine and database effort, it proposes a simple push/pull/search mechanism only based on ES, a tool which can be deployed on nearly any hardware. It is a high-level R-ES binding to ease data usage using 'elastic' package (S. Chamberlain (2020)) <https://docs.ropensci.org/elastic/>, extends joins from 'dplyr' package (H. Wickham et al. (2020)) <https://dplyr.tidyverse.org/> and integrates specific biological format importation with Bioconductor packages such as 'rtracklayer' (M. Lawrence and al. (2009) <doi:10.1093/bioinformatics/btp328>) <http://bioconductor.org/packages/rtracklayer>, 'Biostrings' (H. Pagès and al. (2020) <doi:10.18129/B9.bioc.Biostrings>) <http://bioconductor.org/packages/Biostrings>, and 'Rsamtools' (M. Morgan and al. (2020) <doi:10.18129/B9.bioc.Rsamtools>) <http://bioconductor.org/packages/Rsamtools>, but also a long list of more common ones with 'rio' (C-h. Chan and al. (2018)) <https://cran.r-project.org/package=rio>.

Version: 0.1.1
Depends: R (≥ 4.0)
Imports: R6 (≥ 2.5.0), data.table (≥ 1.13.2), stringr (≥ 1.4.0), purrr (≥ 0.3.4), jsonlite (≥ 1.7.1), rio (≥ 0.5.16), tibble (≥ 3.0.4), dplyr (≥ 1.0.2), magrittr (≥ 1.5), tidyr (≥ 1.1.2), elastic (≥ 1.1.0), Biostrings, Rsamtools, rtracklayer
Suggests: ggplot2 (≥ 3.3.2), readr (≥ 1.4.0), xml2 (≥ 1.3.2), yaml (≥ 2.2.1), testthat (≥ 3.0.0), rmarkdown (≥ 2.5), knitr (≥ 1.30)
Published: 2021-01-28
Author: Régis Ongaro-Carcy ORCID iD [aut, cre, ctb], Arnaud Droit [fnd]
Maintainer: Régis Ongaro-Carcy <regis.ongaro-carcy2 at crchudequebec.ulaval.ca>
BugReports: https://github.com/regisoc/kibior/issues
License: GPL-2
URL: https://github.com/regisoc/kibior
NeedsCompilation: no
Citation: kibior citation info
Materials: README
CRAN checks: kibior results

Documentation:

Reference manual: kibior.pdf
Vignettes: kibior_biological_examples
kibior_introduction

Downloads:

Package source: kibior_0.1.1.tar.gz
Windows binaries: r-devel: kibior_0.1.1.zip, r-release: kibior_0.1.1.zip, r-oldrel: kibior_0.1.1.zip
macOS binaries: r-release (arm64): kibior_0.1.1.tgz, r-oldrel (arm64): kibior_0.1.1.tgz, r-release (x86_64): kibior_0.1.1.tgz, r-oldrel (x86_64): kibior_0.1.1.tgz
Old sources: kibior archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=kibior to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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