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journalabbr

Function

Implementing journal abbreviation for the ‘Journal’ field in BibTex file.

Install

# CRAN
install.packages("journalabbr")

# or 
devtools::install_github("zoushucai/journalabbr")

Require

The format of the bib file is as follows:

@***{****,
  **** = {****},
  **** = "*****",
  *** = {{******}},
  **** = {*****}}

% or

@***{****,
  **** = {****},
  **** = "*****",
  *** = {{******}},
  **** = {*****}
  }
  

Except for the @character line, the rest of the field lines must have an equal sign =

Use

require(journalabbr)
#> 载入需要的程辑包：journalabbr
path0 <- system.file("extdata", "testfile_1.bib", package = "journalabbr", mustWork = TRUE)
temp <- abbr_bib(file = path0, out.file = tempfile(fileext = ".bib"))
#> Warning in read_bib2dt(file): NA value exists in Citation Key, please check the
#> bib file
#> Warning in read_bib2dt(file): 
#> ====== Duplicate key in uploaded Bib file =======:
#> Binmore2008
#> Binmore2008
#> BrandenburgerDekel1989
#> Osborne1994
#> ===============================================
#> Warning in write_dt2bib(item_dt, outfile): NA value in CKEY or ITYPE field
colnames(temp)
#>  [1] "journal_lower" "journal_abbr"  "originFile"    "fz_id"        
#>  [5] "fz_rawchar"    "fz_char"       "CKEY"          "ITYPE"        
#>  [9] "TITLE"         "AUTHOR"        "ORGANIZATION"  "ADDRESS"      
#> [13] "YEAR"          "URL"           "ABSTRACT"      "NOTE"         
#> [17] "JOURNAL"       "VOLUME"        "NUMBER"        "PAGES"        
#> [21] "MONTH"         "PUBLISHER"     "BOOKTITLE"     "CHAPTER"      
#> [25] "EDITOR"        "SHORTTITLE"    "DOI"           "EDITION"      
#> [29] "SCHOOL"        "TYPE"          "INSTITUTION"

path <- system.file("extdata", "testfile_2.bib", package = "journalabbr", mustWork = TRUE)
temptab <- abbr_bib(file = path, out.file = tempfile(fileext = ".bib"))
#> Warning in read_bib2dt(file): 
#> ====== Duplicate key in uploaded Bib file =======:
#> meenakshi2019fuzzy
#> xu2014ordinal
#> ===============================================
colnames(temptab)
#>  [1] "journal_lower" "journal_abbr"  "originFile"    "fz_id"        
#>  [5] "fz_rawchar"    "fz_char"       "CKEY"          "ITYPE"        
#>  [9] "TITLE"         "AUTHOR"        "PUBLISHER"     "YEAR"         
#> [13] "SHORTTITLE"    "VOLUME"        "PAGES"         "JOURNAL"      
#> [17] "LANGUAGE"      "NUMBER"        "MONTH"         "URL"

# add user csv
csvpath <- system.file("extdata", "myabbr.csv", package = "journalabbr", mustWork = TRUE)
temptab1 <- abbr_bib(file = path, out.file = tempfile(fileext = ".bib"), user.csv = csvpath)
#> Warning in read_bib2dt(file): 
#> ====== Duplicate key in uploaded Bib file =======:
#> meenakshi2019fuzzy
#> xu2014ordinal
#> ===============================================
colnames(temptab1)
#>  [1] "journal_lower" "journal_abbr"  "originFile"    "fz_id"        
#>  [5] "fz_rawchar"    "fz_char"       "CKEY"          "ITYPE"        
#>  [9] "TITLE"         "AUTHOR"        "PUBLISHER"     "YEAR"         
#> [13] "SHORTTITLE"    "VOLUME"        "PAGES"         "JOURNAL"      
#> [17] "LANGUAGE"      "NUMBER"        "MONTH"         "URL"

# no return value
abbr_bib_only_journal(file = path, out.file = tempfile(fileext = ".bib"), user.csv = csvpath)
#> NULL

or run shiny

journalabbr::run_example()

or run shiny online

website: https://zoushucai.shinyapps.io/shiny_cankaowenxian/

• It needs to be manually pushed to shinyapps.io, and the implementation is also very simple. Simply click the mouse in Rstudio to operate it

Access internal data

abbrtable = journalabbr:::abbrtable_sys
colnames(abbrtable)
#> [1] "journal_lower" "journal_abbr"  "originFile"

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.