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inctools: Incidence Estimation Tools

Tools for estimating incidence from biomarker data in cross- sectional surveys, and for calibrating tests for recent infection. Implements and extends the method of Kassanjee et al. (2012) <doi:10.1097/EDE.0b013e3182576c07>.

Version: 1.0.15
Depends: R (≥ 3.4.0)
Imports: stats, utils, magrittr, rlang, dplyr, tibble, cubature, tmvtnorm, ggplot2, glm2, plyr, pracma, foreach, parallel, doParallel, binom
Suggests: survey, knitr, rmarkdown
Published: 2019-11-07
Author: Eduard Grebe [cre, aut], Alex Welte [aut], Avery McIntosh [aut], Petra Bäumler [aut], Reshma Kassanjee [ctb], Hilmarie Brand [ctb], Cari Van Schalkwyk [ctb], Yuruo Li [ctb], Simon Daniel [ctb], Stefano Ongarello [aut], Yusuke Asai [ctb], Jeffrey Eaton [ctb]
Maintainer: Eduard Grebe <Eduard.Grebe at ucsf.edu>
BugReports: https://github.com/SACEMA/inctools/issues
License: GPL-3
URL: http://www.incidence-estimation.org/page/inctools
NeedsCompilation: no
CRAN checks: inctools results

Documentation:

Reference manual: inctools.pdf
Vignettes: Estimating incidence
Overview of inctools
Survey design
Test calibration

Downloads:

Package source: inctools_1.0.15.tar.gz
Windows binaries: r-devel: inctools_1.0.15.zip, r-release: inctools_1.0.15.zip, r-oldrel: inctools_1.0.15.zip
macOS binaries: r-release (arm64): inctools_1.0.15.tgz, r-oldrel (arm64): inctools_1.0.15.tgz, r-release (x86_64): inctools_1.0.15.tgz, r-oldrel (x86_64): inctools_1.0.15.tgz
Old sources: inctools archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=inctools to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.