The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Provides S4 classes and methods for reading and manipulating aligned DNA sequences, supporting an indel coding methods (only simple indel coding method is available in the current version), showing base substitutions and indels, calculating absolute pairwise distances between DNA sequences, and collapses identical DNA sequences into haplotypes or inferring haplotypes using user provided absolute pairwise character difference matrix. This package also includes S4 classes and methods for estimating genealogical relationships among haplotypes using statistical parsimony and plotting parsimony networks.
| Version: | 1.1.3.1 |
| Imports: | methods, stats, utils, network, sna, ape, phangorn, plotrix |
| Published: | 2023-07-15 |
| Author: | Caner Aktas |
| Maintainer: | Caner Aktas <caktas.aca at gmail.com> |
| License: | GPL-2 |
| URL: | https://cran.r-project.org, https://biolsystematics.wordpress.com/r/ |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | haplotypes results |
| Reference manual: | haplotypes.pdf |
| Package source: | haplotypes_1.1.3.1.tar.gz |
| Windows binaries: | r-devel: haplotypes_1.1.3.1.zip, r-release: haplotypes_1.1.3.1.zip, r-oldrel: haplotypes_1.1.3.1.zip |
| macOS binaries: | r-release (arm64): haplotypes_1.1.3.1.tgz, r-oldrel (arm64): haplotypes_1.1.3.1.tgz, r-release (x86_64): haplotypes_1.1.3.1.tgz, r-oldrel (x86_64): haplotypes_1.1.3.1.tgz |
| Old sources: | haplotypes archive |
| Reverse suggests: | RAINBOWR |
Please use the canonical form https://CRAN.R-project.org/package=haplotypes to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.