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Imports the 'gkmSVM' v2.0 functionalities into R <https://www.beerlab.org/gkmsvm/> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms. Users should note that the suggested packages 'rtracklayer', 'GenomicRanges', 'BSgenome', 'BiocGenerics', 'Biostrings', 'GenomeInfoDb', 'IRanges', and 'S4Vectors' are all BioConductor packages <https://bioconductor.org>.
| Version: | 0.83.0 |
| Imports: | kernlab, seqinr, utils, ROCR, Rcpp, grDevices, graphics, stats |
| LinkingTo: | Rcpp |
| Suggests: | rtracklayer, GenomicRanges, BSgenome, BSgenome.Hsapiens.UCSC.hg18.masked, BSgenome.Hsapiens.UCSC.hg19.masked, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors |
| Published: | 2023-08-20 |
| Author: | Mahmoud Ghandi |
| Maintainer: | Mike Beer <mbeer at jhu.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| CRAN checks: | gkmSVM results |
| Reference manual: | gkmSVM.pdf |
| Package source: | gkmSVM_0.83.0.tar.gz |
| Windows binaries: | r-devel: gkmSVM_0.83.0.zip, r-release: gkmSVM_0.83.0.zip, r-oldrel: gkmSVM_0.83.0.zip |
| macOS binaries: | r-release (arm64): gkmSVM_0.83.0.tgz, r-oldrel (arm64): gkmSVM_0.83.0.tgz, r-release (x86_64): gkmSVM_0.83.0.tgz, r-oldrel (x86_64): gkmSVM_0.83.0.tgz |
| Old sources: | gkmSVM archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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