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Computes chlorophyll a fluorescence transient parameters from fluorescence summary data, including minimum and maximum fluorescence, selected transient steps, and area. Provides standard photosynthetic performance indices and fluxes per reaction center and per cross section. Includes helpers to read exported trace tables in supported 'csv' formats and validation workflows based on bundled example files, as well as visualization tools and an interactive 'shiny' interface. The implemented calculations are based on Strasser et al. (2004) <doi:10.1007/978-1-4020-3218-9_12> and Stirbet and Govindjee (2011) <doi:10.1016/j.jphotobiol.2010.12.010>.
| Version: | 0.1.1 |
| Depends: | R (≥ 4.1.0) |
| Imports: | stats, utils, graphics, grDevices, readxl |
| Suggests: | knitr, rmarkdown, scatterplot3d, shiny, testthat (≥ 3.0.0) |
| Published: | 2026-04-09 |
| DOI: | 10.32614/CRAN.package.fluorojip (may not be active yet) |
| Author: | Joao Everthon da Silva Ribeiro [aut, cre], Toshik Iarley da Silva [aut], Ronald Maldonado Rodriguez [aut] |
| Maintainer: | Joao Everthon da Silva Ribeiro <everthonribeiro10 at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | fluorojip results |
| Reference manual: | fluorojip.html , fluorojip.pdf |
| Vignettes: |
Introduction to fluorojip (source, R code) |
| Package source: | fluorojip_0.1.1.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): fluorojip_0.1.1.tgz, r-oldrel (x86_64): fluorojip_0.1.1.tgz |
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These binaries (installable software) and packages are in development.
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