The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Also abbreviates to "CCSeq". Finds clusters of colocalized sequences in .bed annotation files up to a specified cut-off distance. Two sequences are colocalized if they are within the cut-off distance of each other, and clusters are sets of sequences where each sequence is colocalized to at least one other sequence in the cluster. For a set of .bed annotation tables provided in a list along with a cut-off distance, the program will output a file containing the locations of each cluster. Annotated .bed files are from the 'pwmscan' application at <https://ccg.epfl.ch/pwmtools/pwmscan.php>. Personal machines might crash or take excessively long depending on the number of annotated sequences in each file and whether chromsearch() or gensearch() is used.
| Version: | 0.2.0 |
| Depends: | R (≥ 3.0.0) |
| Imports: | foreach, doParallel, purrr, utils |
| Published: | 2019-10-18 |
| Author: | Stefan Golas [cre, aut] |
| Maintainer: | Stefan Golas <stefanmgolas at gmail.com> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| CRAN checks: | colocalized results |
| Reference manual: | colocalized.pdf |
| Package source: | colocalized_0.2.0.tar.gz |
| Windows binaries: | r-devel: colocalized_0.2.0.zip, r-release: colocalized_0.2.0.zip, r-oldrel: colocalized_0.2.0.zip |
| macOS binaries: | r-release (arm64): colocalized_0.2.0.tgz, r-oldrel (arm64): colocalized_0.2.0.tgz, r-release (x86_64): colocalized_0.2.0.tgz, r-oldrel (x86_64): colocalized_0.2.0.tgz |
| Old sources: | colocalized archive |
Please use the canonical form https://CRAN.R-project.org/package=colocalized to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.