coglasso: Collaborative Graphical Lasso - Multi-Omics Network Reconstruction
Reconstruct networks from multi-omics data sets with the collaborative graphical lasso (coglasso) algorithm described in Albanese, A., Kohlen, W., and Behrouzi, P. (2024) <doi:10.48550/arXiv.2403.18602>. Build multiple networks using the coglasso() function, select the best one with stars_coglasso().
| Version: | 1.0.2 |
| Depends: | R (≥ 2.10) |
| Imports: | Matrix, Rcpp (≥ 1.0.11), stats, utils |
| LinkingTo: | Rcpp, RcppEigen |
| Suggests: | igraph, knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2024-04-03 |
| Author: | Alessio Albanese 
[aut, cre, cph],
Pariya Behrouzi
[aut] |
| Maintainer: | Alessio Albanese <alessio.albanese at wur.nl> |
| BugReports: | https://github.com/DrQuestion/coglasso/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/DrQuestion/coglasso, https://drquestion.github.io/coglasso/ |
| NeedsCompilation: | yes |
| Citation: | coglasso citation info |
| Materials: | README NEWS |
| CRAN checks: | coglasso results |
Documentation:
| Reference manual: | coglasso.pdf |
| Vignettes: |
Reconstructing mult-omics networks with coglasso Reproduction of manuscript's results |
Downloads:
| Package source: | coglasso_1.0.2.tar.gz |
| Windows binaries: | r-devel: coglasso_1.0.2.zip, r-release: coglasso_1.0.2.zip, r-oldrel: coglasso_1.0.2.zip |
| macOS binaries: | r-release (arm64): coglasso_1.0.2.tgz, r-oldrel (arm64): coglasso_1.0.2.tgz, r-release (x86_64): coglasso_1.0.2.tgz, r-oldrel (x86_64): coglasso_1.0.2.tgz |
Linking:
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