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Please cite 'calmate' and use of the CalMaTe method using the following reference:

Ortiz-Estevez, Maria, Aramburu, Ander, Bengtsson, Henrik, Neuvial, Pierre, Rubio, Angel (2012). “CalMaTe: A method and software to improve allele-specific copy number of SNP arrays for downstream segmentation.” Bioinformatics, 28(13), 1793–1794. doi:10.1093/bioinformatics/bts248.

Corresponding BibTeX entry: 

  @Article{OrtizEstevez2012,
    author = {{Ortiz-Estevez} and {Maria} and {Aramburu} and {Ander}
      and {Bengtsson} and {Henrik} and {Neuvial} and {Pierre} and
      {Rubio} and {Angel}},
    journal = {Bioinformatics},
    title = {CalMaTe: A method and software to improve allele-specific
      copy number of SNP arrays for downstream segmentation},
    year = {2012},
    number = {13},
    pages = {1793--1794},
    volume = {28},
    publisher = {Oxford University Press},
    doi = {10.1093/bioinformatics/bts248},
  }

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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