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General optimisation and specific tools for the parameter estimation (i.e. calibration) of complex models, including stochastic ones. It implements generic functions that can be used for fitting any type of models, especially those with non-differentiable objective functions, with the same syntax as base::optim. It supports multiple phases estimation (sequential parameter masking), constrained optimization (bounding box restrictions) and automatic parallel computation of numerical gradients. Some common maximum likelihood estimation methods and automated construction of the objective function from simulated model outputs is provided. See <https://roliveros-ramos.github.io/calibrar/> for more details.
| Version: | 0.9.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | BB, cmaes, DEoptim, dfoptim, GenSA, graphics, minqa, optimx, foreach, lbfgsb3c, parallel, pso, rgenoud, soma, stats, stringr, utils |
| Suggests: | deSolve, ibm, knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2024-02-14 |
| Author: | Ricardo Oliveros-Ramos [aut, cre] |
| Maintainer: | Ricardo Oliveros-Ramos <ricardo.oliveros at gmail.com> |
| BugReports: | https://github.com/roliveros-ramos/calibrar/issues |
| License: | GPL-2 |
| URL: | https://roliveros-ramos.github.io/calibrar/ |
| NeedsCompilation: | no |
| Citation: | calibrar citation info |
| Materials: | README |
| In views: | Optimization |
| CRAN checks: | calibrar results |
| Reference manual: | calibrar.pdf |
| Vignettes: |
Getting started with the 'calibrar' package |
| Package source: | calibrar_0.9.0.tar.gz |
| Windows binaries: | r-devel: calibrar_0.9.0.zip, r-release: calibrar_0.9.0.zip, r-oldrel: calibrar_0.9.0.zip |
| macOS binaries: | r-release (arm64): calibrar_0.9.0.tgz, r-oldrel (arm64): calibrar_0.9.0.tgz, r-release (x86_64): calibrar_0.9.0.tgz, r-oldrel (x86_64): calibrar_0.9.0.tgz |
| Old sources: | calibrar archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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