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T/F variable names
(the observed transitions argument T of
fit_iot() and row_ce_loss() is now
T_obs, and the fitted feature count F is now
n_feat); the has_cel_file() /
find_platform_file() example is now runnable (no
\dontrun).soft_sinkhorn()
(Anderson-accelerated semi-relaxed soft Sinkhorn),
row_conditional(), make_cost(),
row_ce_loss(), zscore_phi().fit_iot() with exact implicit gradients,
two-stage debias refit and multi-restart;
print/summary methods for
bioIOT_fit.transition_matrix(),
pseudotime_from_transition(),
build_state_features().runIOT() generic with
matrix, SingleCellExperiment and Seurat methods.plot_transition_heatmap(),
plot_transition_flow(), plot_theta(),
plot_pathway_trend().simulate_iot_states() plus
bundled dataset demo_iot_states.pathway_markers,
score_pathways, collapse_probes,
gsm_id, has_cel_file,
find_platform_file.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.