The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Genomic regions processing using open-source command line tools such as 'BEDTools', 'BEDOPS' and 'Tabix'. These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging. bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.
| Version: | 1.0.7 |
| Depends: | R (≥ 3.0) |
| Imports: | testthat (≥ 0.7.1), VennDiagram (≥ 1.6.4), data.table (≥ 1.8.11), R.utils (≥ 2.0.2), yaml (≥ 2.1.10), parallel, grid |
| Suggests: | knitr (≥ 1.4), rmarkdown (≥ 0.9.5) |
| Published: | 2019-04-01 |
| Author: | Syed Haider [aut], Daryl Waggott [aut], Emilie Lalonde [ctb], Clement Fung [ctb], Paul C. Boutros [aut, cre, cph] |
| Maintainer: | Paul C. Boutros <pboutros at mednet.ucla.edu> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| SystemRequirements: | Preferred genomic operations engine: 'BEDTools', 'BEDOPS' and 'Tabix (>= 1.3)'. |
| Materials: | NEWS |
| CRAN checks: | bedr results |
| Reference manual: | bedr.pdf |
| Vignettes: |
bedr |
| Package source: | bedr_1.0.7.tar.gz |
| Windows binaries: | r-devel: bedr_1.0.7.zip, r-release: bedr_1.0.7.zip, r-oldrel: bedr_1.0.7.zip |
| macOS binaries: | r-release (arm64): bedr_1.0.7.tgz, r-oldrel (arm64): bedr_1.0.7.tgz, r-release (x86_64): bedr_1.0.7.tgz, r-oldrel (x86_64): bedr_1.0.7.tgz |
| Old sources: | bedr archive |
| Reverse imports: | chicane, Ravages |
Please use the canonical form https://CRAN.R-project.org/package=bedr to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.