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Implements the Bayesian FDR control described by Newton et al. (2004), <doi:10.1093/biostatistics/5.2.155>. Allows optimisation and visualisation of expected error rates based on tail posterior probability tests. Based on code written by Catalina Vallejos for BASiCS, see Beyond comparisons of means: understanding changes in gene expression at the single-cell level Vallejos et al. (2016) <doi:10.1186/s13059-016-0930-3>.
| Version: | 0.2.1 |
| Imports: | ggplot2, reshape2, assertthat, utils, cowplot, ggExtra, stats |
| Suggests: | testthat, pkgdown |
| Published: | 2022-10-26 |
| Author: | Alan O'Callaghan [aut, cre], Catalina Vallejos [aut] |
| Maintainer: | Alan O'Callaghan <alan.ocallaghan at outlook.com> |
| BugReports: | https://github.com/VallejosGroup/bayefdr/issues |
| License: | GPL-3 |
| URL: | https://github.com/VallejosGroup/bayefdr |
| NeedsCompilation: | no |
| Language: | en-gb |
| Materials: | README NEWS |
| In views: | Bayesian, Omics |
| CRAN checks: | bayefdr results |
| Reference manual: | bayefdr.pdf |
| Package source: | bayefdr_0.2.1.tar.gz |
| Windows binaries: | r-devel: bayefdr_0.2.1.zip, r-release: bayefdr_0.2.1.zip, r-oldrel: bayefdr_0.2.1.zip |
| macOS binaries: | r-release (arm64): bayefdr_0.2.1.tgz, r-oldrel (arm64): bayefdr_0.2.1.tgz, r-release (x86_64): bayefdr_0.2.1.tgz, r-oldrel (x86_64): bayefdr_0.2.1.tgz |
| Old sources: | bayefdr archive |
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