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An ASCII ruler is for measuring text and is especially useful for
sequence analysis. Methods asciiruler to create ASCII
rulers and genbank_seqblock to create “GenBank sequence
blocks”, known for their distinctive column-structure, are provided.
devtools::install_github("leipzig/asciiruler")
library("asciiruler")
asciiruler(low=-30,high=30,borders=TRUE)+----------------------------------------------------------------+
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| | | | | | | | | | | | | | |
|-30 -25 -20 -15 -10 -5 0 5 10 15 20 25 30|
+----------------------------------------------------------------+my_sequence<-
'GATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGG
GTATGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTC
CTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTA
ATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCTGCACAGCCACTTTCCACACAGACATC'
my_seqblock<-genbank_seqblock(my_sequence)
cat(my_seqblock) 1 6 11 16 21 26 31 36 41 46 51 56
| | | | | | | | | | | |
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
1 GATCACAGGT CTATCACCCT ATTAACCACT CACGGGAGCT CTCCATGCAT TTGGTATTTT
61 CGTCTGGGGG GTATGCACGC GATAGCATTG CGAGACGCTG GAGCCGGAGC ACCCTATGTC
121 GCAGTATCTG TCTTTGATTC CTGCCTCATC CTATTATTTA TCGCACCTAC GTTCAATATT
181 ACAGGCGAAC ATACTTACTA AAGTGTGTTA ATTAATTAAT GCTTGTAGGA CATAATAATA
241 ACAATTGAAT GTCTGCACAG CCACTTTCCA CACAGACATCThese binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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