The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Generates stochastic time series and genealogies associated with a population dynamics model. Times series are simulated using the Gillespie exact and approximate algorithms and a new algorithm we introduce that uses both approaches to optimize the time execution of the simulations. Genealogies are simulated from a trajectory using a backwards-in-time based approach. Methods are described in Danesh G et al (2022) <doi:10.1111/2041-210X.14038>.
| Version: | 1.2.3 |
| Depends: | R (≥ 3.5.0) |
| Imports: | graphics, grDevices, gtools, inline, methods, Rcpp (≥ 0.12.14), stats, stringr, utils |
| LinkingTo: | Rcpp |
| Suggests: | knitr, rmarkdown, ape, testthat (≥ 3.0.0) |
| Published: | 2023-05-23 |
| Author: | Gonche Danesh [aut, cre, cph], Emma Saulnier [aut, cph], Olivier Gascuel [aut, cph], Marc Choisy [aut, cph, ths], Samuel Alizon [aut, cph, ths] |
| Maintainer: | Gonche Danesh <gonche.danesh at gmail.com> |
| BugReports: | https://gitlab.in2p3.fr/ete/tips/-/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://gitlab.in2p3.fr/ete/tips/ |
| NeedsCompilation: | yes |
| Citation: | TiPS citation info |
| Materials: | README |
| CRAN checks: | TiPS results |
| Reference manual: | TiPS.pdf |
| Vignettes: |
TiPS |
| Package source: | TiPS_1.2.3.tar.gz |
| Windows binaries: | r-devel: TiPS_1.2.3.zip, r-release: TiPS_1.2.3.zip, r-oldrel: TiPS_1.2.3.zip |
| macOS binaries: | r-release (arm64): TiPS_1.2.3.tgz, r-oldrel (arm64): TiPS_1.2.3.tgz, r-release (x86_64): TiPS_1.2.3.tgz, r-oldrel (x86_64): TiPS_1.2.3.tgz |
| Old sources: | TiPS archive |
Please use the canonical form https://CRAN.R-project.org/package=TiPS to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.