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Statistical analysis as part of a stable isotope probing (SIP) metagenomics study to identify isotope incorporating taxa recovered as metagenome-assembled genomes (MAGs). Helpful reading and a vignette in bookdown format is provided on the package site <https://zielslab.github.io/SIPmg.github.io/>.
| Version: | 1.4.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | HTSSIP, dplyr, lazyeval, phyloseq, plyr, stringr, tibble, tidyr, magrittr, ggplot2, ggpubr, purrr, rlang, MASS, DESeq2, data.table, utils |
| Suggests: | rmarkdown, knitr, EBImage, readr, BiocManager |
| Published: | 2023-02-22 |
| Author: | Pranav Sampara [aut, cre], Kate Waring [ctb], Ryan Ziels [aut] |
| Maintainer: | Pranav Sampara <pranav.sai.4 at gmail.com> |
| BugReports: | https://github.com/ZielsLab/SIPmg |
| License: | GPL-2 |
| URL: | https://zielslab.github.io/SIPmg.github.io/ |
| NeedsCompilation: | yes |
| CRAN checks: | SIPmg results |
| Reference manual: | SIPmg.pdf |
| Vignettes: |
SIPmg-vignette |
| Package source: | SIPmg_1.4.1.tar.gz |
| Windows binaries: | r-devel: SIPmg_1.4.1.zip, r-release: SIPmg_1.4.1.zip, r-oldrel: SIPmg_1.4.1.zip |
| macOS binaries: | r-release (arm64): SIPmg_1.4.1.tgz, r-oldrel (arm64): SIPmg_1.4.1.tgz, r-release (x86_64): SIPmg_1.4.1.tgz, r-oldrel (x86_64): SIPmg_1.4.1.tgz |
| Old sources: | SIPmg archive |
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These binaries (installable software) and packages are in development.
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