SCpubr: Generate Publication Ready Visualizations of Single Cell Transcriptomics Data

A system that provides a streamlined way of generating publication ready plots for known Single-Cell transcriptomics data in a “publication ready” format. This is, the goal is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.

Version:	2.0.2
Depends:	R (≥ 4.0.0)
Suggests:	AnnotationDbi, assertthat, AUCell, circlize, cli, cluster, clusterProfiler, colorspace, ComplexHeatmap, covr, decoupleR, dplyr (≥ 1.1.0), enrichplot, forcats, ggalluvial, ggbeeswarm, ggdist, ggExtra, ggh4x, ggnewscale, ggplot2 (≥ 3.4.0), ggplotify, ggrastr, ggrepel, ggridges, ggsignif, graphics, infercnv, knitr, labeling, magrittr, MASS, Matrix, methods, Nebulosa, org.Hs.eg.db, patchwork, pheatmap, plyr, purrr, qpdf, RColorBrewer, rjags, rlang, rmarkdown, scales, scattermore, Seurat, SeuratObject, sf, stringr, svglite, testthat (≥ 3.0.0), tibble, tidyr, UCell, viridis, withr
Published:	2023-10-11
Author:	Enrique Blanco-Carmona [cre, aut]
Maintainer:	Enrique Blanco-Carmona <scpubr at gmail.com>
BugReports:	https://github.com/enblacar/SCpubr/issues/
License:	GPL-3
URL:	https://github.com/enblacar/SCpubr/, https://enblacar.github.io/SCpubr-book/
NeedsCompilation:	no
Citation:	SCpubr citation info
Materials:	README NEWS
CRAN checks:	SCpubr results

Documentation:

Reference manual:	SCpubr.pdf
Vignettes:	reference_manual

Downloads:

Package source:	SCpubr_2.0.2.tar.gz
Windows binaries:	r-devel: SCpubr_2.0.2.zip, r-release: SCpubr_2.0.2.zip, r-oldrel: SCpubr_2.0.2.zip
macOS binaries:	r-release (arm64): SCpubr_2.0.2.tgz, r-oldrel (arm64): SCpubr_2.0.2.tgz, r-release (x86_64): SCpubr_2.0.2.tgz, r-oldrel (x86_64): SCpubr_2.0.2.tgz
Old sources:	SCpubr archive

Linking:

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