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A custom implementation of the apriori algorithm and binomial tests to identify combinations of features (genes, variants etc) significantly enriched for simultaneous mutations/events from sparse Boolean input, see Vijay Kumar Pounraja, Santhosh Girirajan (2021). Version 1.1 includes a minor adjustment to the number of combinations to be considered for multiple testing correction. This updated version is more conservative in its approach and hence more selective. <doi:10.1101/2021.10.01.462832>.
Version: | 1.1 |
Depends: | R (≥ 2.10) |
Imports: | magrittr, arules, dplyr, methods, pwr, stringr, tidyr, reshape2, sqldf |
Published: | 2022-02-24 |
DOI: | 10.32614/CRAN.package.RareComb |
Author: | Vijay Kumar Pounraja
|
Maintainer: | Vijay Kumar Pounraja <vijaykumar.mp at gmail.com> |
License: | MIT + file LICENSE |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | RareComb results |
Reference manual: | RareComb.pdf |
Package source: | RareComb_1.1.tar.gz |
Windows binaries: | r-devel: RareComb_1.1.zip, r-release: RareComb_1.1.zip, r-oldrel: RareComb_1.1.zip |
macOS binaries: | r-release (arm64): RareComb_1.1.tgz, r-oldrel (arm64): RareComb_1.1.tgz, r-release (x86_64): RareComb_1.1.tgz, r-oldrel (x86_64): RareComb_1.1.tgz |
Old sources: | RareComb archive |
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