To cite package 'RZooRoH' in publications, please use:

Druet T, Gautier M (2017). “A model-based approach to characterize individual inbreeding at both global and local genomic scales.” Molecular Ecology, 26(20), 5820-5841. doi:10.1111/mec.14324, https://doi.org/10.1111/mec.14324.

Bertrand AR, Kadri NK, Flori L, Gautier M, Druet T (2019). “RZooRoH: an R package to characterize individual genomic autozygosity and identify homozygous-by-descent segments.” Methods in Ecology and Evolution, 10(6), 860-866. doi:10.1111/2041-210X.13167, https://doi.org/10.1111/2041-210X.13167.

Druet T, Gautier M (2022). “A hidden Markov model to estimate homozygous-by-descent probabilities associated with nested layers of ancestors.” Theoretical Population Biology, 145, 38-51. doi:10.1016/j.tpb.2022.03.001, https://doi.org/10.1016/j.tpb.2022.03.001.

Corresponding BibTeX entries:

  @Article{,
    title = {A model-based approach to characterize individual
      inbreeding at both global and local genomic scales.},
    author = {Tom Druet and Mathieu Gautier},
    journal = {Molecular Ecology},
    year = {2017},
    volume = {26},
    number = {20},
    pages = {5820-5841},
    url = {https://doi.org/10.1111/mec.14324},
    doi = {10.1111/mec.14324},
  }

  @Article{,
    title = {RZooRoH: an R package to characterize individual genomic
      autozygosity and identify homozygous-by-descent segments.},
    author = {Amandine R Bertrand and Naveen K Kadri and Laurence Flori
      and Mathieu Gautier and Tom Druet},
    journal = {Methods in Ecology and Evolution},
    year = {2019},
    volume = {10},
    number = {6},
    pages = {860-866},
    url = {https://doi.org/10.1111/2041-210X.13167},
    doi = {10.1111/2041-210X.13167},
  }

  @Article{,
    title = {A hidden Markov model to estimate homozygous-by-descent
      probabilities associated with nested layers of ancestors.},
    author = {Tom Druet and Mathieu Gautier},
    journal = {Theoretical Population Biology},
    year = {2022},
    volume = {145},
    pages = {38-51},
    url = {https://doi.org/10.1016/j.tpb.2022.03.001},
    doi = {10.1016/j.tpb.2022.03.001},
  }