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Qploidy 1.5.4

• Fix links
• Fix Unicode character
• Add Taniguti to wordlist

Qploidy 1.5.3

• Remove HMM functions (exclusive to Qploidy2)
• Add migration notice
• Change maintainer email

Qploidy 1.5.2

• Z-score calculation is now only applied to markers not filtered by genotype probabilities and missing data
• Markers filtered out during standardization are not considered to define the window boundaries for HMM CNV estimation
• Last window of each chromosome are never smaller than the defined window size
• CN HMM plots follow same scale for easier comparison between metrics by window

Qploidy 1.5.1

• Fix HMM CNV estimation when some of the windows don’t have heterozygous genotypes (use only z-score for them)
• Improve Shiny interface for HMM CNV estimation

Qploidy 1.5.0

• Add HMM to estimate CN (beta version)
• Shiny interface improvements
• Add CSV or TSV as possible input files

Qploidy 1.1.0

• Beta version of Qploidy + BIGapp interface
• Fix Bioconductor dependency call
• Fix %>% call

Qploidy 1.0.0

• First release
• Functions improvements including comprehensive documentation
• Vignette with functional simulated example
• Testthat tests included
• CRAN submission

Qploidy 0.0.0.9000

• This is a beta version
• Initial addition of functions
• First version of the vignette

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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