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Nestimate: Network Estimation, Bootstrap, and Higher-Order Analysis

Estimate, compare, and analyze dynamic and psychological networks using a unified interface. Provides transition network analysis estimation (transition, frequency, co-occurrence, attention-weighted) Saqr et al. (2025) <doi:10.1145/3706468.3706513>, psychological network methods (correlation, partial correlation, 'graphical lasso', 'Ising') Saqr, Beck, and Lopez-Pernas (2024) <doi:10.1007/978-3-031-54464-4_19>, and higher-order network methods including higher-order networks, higher-order network embedding, hyper-path anomaly, and multi-order generative model. Supports bootstrap inference, permutation testing, split-half reliability, centrality stability analysis, mixed Markov models, multi-cluster multi-layer networks and clustering.

Version: 0.3.0
Depends: R (≥ 3.5)
Imports: ggplot2, glasso, data.table, cluster
Suggests: testthat (≥ 3.0.0), tna, cograph, igraph, glmnet, lavaan, stringdist, nnet, IsingFit, bootnet, gimme, qgraph, reticulate, gridExtra, knitr, rmarkdown, pkgdown
Published: 2026-04-08
DOI: 10.32614/CRAN.package.Nestimate (may not be active yet)
Author: Mohammed Saqr [aut, cre, cph], Sonsoles López-Pernas [aut]
Maintainer: Mohammed Saqr <saqr at saqr.me>
BugReports: https://github.com/mohsaqr/Nestimate/issues
License: MIT + file LICENSE
URL: https://github.com/mohsaqr/Nestimate
NeedsCompilation: no
Language: en-US
Materials: README, NEWS
CRAN checks: Nestimate results

Documentation:

Reference manual: Nestimate.html , Nestimate.pdf
Vignettes: Sequence Clustering (source, R code)
Co-occurrence Networks with Nestimate (source, R code)
Link Prediction and Association Rules (source, R code)
Psychological Network Analysis with Nestimate (source, R code)
Network Estimation and Analysis with Nestimate (source, R code)

Downloads:

Package source: Nestimate_0.3.0.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): Nestimate_0.3.0.tgz, r-oldrel (x86_64): Nestimate_0.3.0.tgz

Reverse dependencies:

Reverse suggests: cograph

Linking:

Please use the canonical form https://CRAN.R-project.org/package=Nestimate to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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