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MAGEE: Mixed Model Association Test for GEne-Environment Interaction

Use a 'glmmkin' class object (GMMAT package) from the null model to perform generalized linear mixed model-based single-variant and variant set main effect tests, gene-environment interaction tests, and joint tests for association, as proposed in Wang et al. (2020) <doi:10.1002/gepi.22351>.

Version: 1.4.1
Depends: R (≥ 3.2.0)
Imports: Rcpp, Matrix, parallel, MASS, foreach, GMMAT, CompQuadForm, data.table
LinkingTo: Rcpp, RcppArmadillo
Suggests: doMC, SeqArray, SeqVarTools, testthat
Published: 2024-04-28
Author: Xinyu Wang [aut], Han Chen [aut, cre], Duy Pham [aut], Kenneth Westerman [ctb], Cong Pan [aut], Eric Biggers [ctb, cph] (Author and copyright holder of included libdeflate library), Tino Reichardt [ctb, cph] (Author and copyright holder of threading code used in the included Zstandard (zstd) library), Meta Platforms, Inc. and affiliates [cph] (Copyright holder of included Zstandard (zstd) library)
Maintainer: Han Chen <han.chen.2 at uth.tmc.edu>
License: GPL (≥ 3)
Copyright: See COPYRIGHTS for details.
MAGEE copyright details
NeedsCompilation: yes
CRAN checks: MAGEE results

Documentation:

Reference manual: MAGEE.pdf
Vignettes: MAGEE

Downloads:

Package source: MAGEE_1.4.1.tar.gz
Windows binaries: r-devel: MAGEE_1.4.1.zip, r-release: MAGEE_1.4.1.zip, r-oldrel: MAGEE_1.4.1.zip
macOS binaries: r-release (arm64): MAGEE_1.4.1.tgz, r-oldrel (arm64): MAGEE_1.4.1.tgz, r-release (x86_64): MAGEE_1.4.1.tgz, r-oldrel (x86_64): MAGEE_1.4.1.tgz
Old sources: MAGEE archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=MAGEE to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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