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MAAPER: Analysis of Alternative Polyadenylation Using 3' End-Linked
Reads
A computational method developed for model-based analysis of alternative polyadenylation (APA) using 3' end-linked reads. It accurately assigns 3' RNA-seq reads to polyA sites through statistical modeling, and generates multiple statistics for APA analysis. Please also see Li WV, Zheng D, Wang R, Tian B (2021) <doi:10.1186/s13059-021-02429-5>.
| Version: |
1.1.1 |
| Imports: |
parallel, GenomicRanges, GenomicAlignments, GenomicFeatures, GenomeInfoDb, stats, utils, Rsamtools, IRanges, MASS |
| Suggests: |
knitr, rmarkdown |
| Published: |
2021-08-14 |
| Author: |
Wei Vivian Li 
[aut, cre] |
| Maintainer: |
Wei Vivian Li <vivian.li at rutgers.edu> |
| License: |
GPL-3 |
| URL: |
https://github.com/Vivianstats/MAAPER,
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02429-5 |
| NeedsCompilation: |
no |
| In views: |
Omics |
| CRAN checks: |
MAAPER results |
Documentation:
Downloads:
Linking:
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https://CRAN.R-project.org/package=MAAPER
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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