The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
Statistical framework to analyze heritability of gene expression based on next-generation sequencing data and simulating sequencing reads. Variance partition coefficients (VPC) are computed using linear mixed effects and generalized linear mixed effects models. Compound Poisson and negative binomial models are included. Reference: Rudra, Pratyaydipta, et al. "Model based heritability scores for high-throughput sequencing data." BMC bioinformatics 18.1 (2017): 143.
| Version: | 1.0.2 |
| Depends: | R (≥ 3.2.3) |
| Imports: | cplm, DESeq2, lme4, pbapply, tweedie, MASS, SummarizedExperiment |
| Published: | 2021-07-12 |
| Author: | W. Jenny Shi [aut, cre], Pamela Russell [aut], Pratyaydipta Rudra [aut, cre], Brian Vestal [aut, cre], Katerina Kechris [aut], Laura Saba [aut] |
| Maintainer: | W. Jenny Shi <wjennyshi at gmail.com> |
| BugReports: | https://github.com/KechrisLab/HeritSeq/issues |
| License: | GPL-2 |
| NeedsCompilation: | no |
| CRAN checks: | HeritSeq results |
| Reference manual: | HeritSeq.pdf |
| Package source: | HeritSeq_1.0.2.tar.gz |
| Windows binaries: | r-devel: HeritSeq_1.0.2.zip, r-release: HeritSeq_1.0.2.zip, r-oldrel: HeritSeq_1.0.2.zip |
| macOS binaries: | r-release (arm64): HeritSeq_1.0.2.tgz, r-oldrel (arm64): HeritSeq_1.0.2.tgz, r-release (x86_64): HeritSeq_1.0.2.tgz, r-oldrel (x86_64): HeritSeq_1.0.2.tgz |
| Old sources: | HeritSeq archive |
Please use the canonical form https://CRAN.R-project.org/package=HeritSeq to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.