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Despite the plethora of methods available for the functional analysis of omics data, obtaining comprehensive- yet detailed understanding of the results remains challenging. GOplot takes the output of any general enrichment analysis and generates plots at different levels of detail: from a general overview to identify the most enriched categories (bar plot, bubble plot) to a more detailed view displaying different types of information for molecules in a given set of categories (circle plot, chord plot, cluster plot). The package provides a deeper insight into omics data and allows scientists to generate insightful plots with only a few lines of code to easily communicate the findings.
GOplot is available via CRAN: http://cran.r-project.org/web/packages/GOplot
install.packages("GOplot")install_github("wencke/wencke.github.io")For preprocessing: circle_dat(), chord_dat() and reduce_overlap()
For plotting: GOBubble(), GOBar(), GOChord(), GOCluster(), GOCircle(), GOVenn(), GOHeat()
A manual can be found on the website https://wencke.github.io/
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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