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CAMML: Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling

Creates multi-label cell-types for single-cell RNA-sequencing data based on weighted VAM scoring of cell-type specific gene sets. Schiebout, Frost (2022) <https://psb.stanford.edu/psb-online/proceedings/psb22/schiebout.pdf>.

Version: 1.0.0
Depends: R (≥ 3.6.0)
Imports: VAM, Seurat (≥ 4.0.0), MASS, Matrix (≥ 1.3.3), utils, BiocManager, org.Hs.eg.db, org.Dr.eg.db, org.Mm.eg.db, AnnotationDbi, SeuratObject (≥ 4.0.0), methods, edgeR
Suggests: sctransform (≥ 0.3.2)
Published: 2023-11-13
DOI: 10.32614/CRAN.package.CAMML
Author: H. Robert Frost [aut], Courtney Schiebout ORCID iD [aut, cre]
Maintainer: Courtney Schiebout <courtney.t.schiebout.gr at dartmouth.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
Copyright: Dartmouth College
NeedsCompilation: no
CRAN checks: CAMML results

Documentation:

Reference manual: CAMML.pdf
Vignettes: CAMML_FigureVignette
CAMMLQuick
CAMML
ChIMP

Downloads:

Package source: CAMML_1.0.0.tar.gz
Windows binaries: r-devel: CAMML_1.0.0.zip, r-release: CAMML_1.0.0.zip, r-oldrel: CAMML_1.0.0.zip
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): CAMML_1.0.0.tgz, r-release (x86_64): CAMML_1.0.0.tgz, r-oldrel (x86_64): not available
Old sources: CAMML archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=CAMML to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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