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A toolkit to perform cross-species analysis based on scRNA-seq data. This package contains 5 main features. (1) identify Markers in each cluster. (2) Cell type annotation (3) identify conserved markers. (4) identify conserved cell types. (5) identify conserved modules of regulatory networks.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.0), Seurat |
| Imports: | pheatmap, pbapply, psych, ROCR, reshape2, dplyr, grDevices, stats, methods, viridisLite |
| Suggests: | knitr, testthat (≥ 3.0.0) |
| Published: | 2022-05-18 |
| Author: | Junyao Jiang |
| Maintainer: | Junyao Jiang <jiangjunyao789 at 163.com> |
| BugReports: | https://github.com/jiang-junyao/CACIMAR/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/jiang-junyao/CACIMAR |
| NeedsCompilation: | no |
| CRAN checks: | CACIMAR results |
| Reference manual: | CACIMAR.pdf |
| Package source: | CACIMAR_1.0.0.tar.gz |
| Windows binaries: | r-devel: CACIMAR_1.0.0.zip, r-release: CACIMAR_1.0.0.zip, r-oldrel: CACIMAR_1.0.0.zip |
| macOS binaries: | r-release (arm64): CACIMAR_1.0.0.tgz, r-oldrel (arm64): CACIMAR_1.0.0.tgz, r-release (x86_64): CACIMAR_1.0.0.tgz, r-oldrel (x86_64): CACIMAR_1.0.0.tgz |
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These binaries (installable software) and packages are in development.
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