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BiBitR: R Wrapper for Java Implementation of BiBit

A simple R wrapper for the Java BiBit algorithm from "A biclustering algorithm for extracting bit-patterns from binary datasets" from Domingo et al. (2011) <doi:10.1093/bioinformatics/btr464>. An simple adaption for the BiBit algorithm which allows noise in the biclusters is also introduced as well as a function to guide the algorithm towards given (sub)patterns. Further, a workflow to derive noisy biclusters from discoverd larger column patterns is included as well.

Version: 0.3.1
Imports: stats, foreign, methods, utils, viridis, cluster, dendextend, lattice, grDevices, graphics, randomcoloR, biclust
Published: 2017-06-30
DOI: 10.32614/CRAN.package.BiBitR
Author: De Troyer Ewoud
Maintainer: De Troyer Ewoud <ewoud.detroyer at uhasselt.be>
License: GPL-3
NeedsCompilation: no
SystemRequirements: Java
Materials: README
CRAN checks: BiBitR results

Documentation:

Reference manual: BiBitR.pdf

Downloads:

Package source: BiBitR_0.3.1.tar.gz
Windows binaries: r-devel: BiBitR_0.3.1.zip, r-release: BiBitR_0.3.1.zip, r-oldrel: BiBitR_0.3.1.zip
macOS binaries: r-release (arm64): BiBitR_0.3.1.tgz, r-oldrel (arm64): BiBitR_0.3.1.tgz, r-release (x86_64): BiBitR_0.3.1.tgz, r-oldrel (x86_64): BiBitR_0.3.1.tgz
Old sources: BiBitR archive

Reverse dependencies:

Reverse depends: RcmdrPlugin.BiclustGUI
Reverse imports: miRSM

Linking:

Please use the canonical form https://CRAN.R-project.org/package=BiBitR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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