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BEDMatrix: Extract Genotypes from a PLINK .bed File

A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole genome association analysis toolset, without loading the entire file into memory.

Version: 2.0.3
Depends: R (≥ 3.0.2)
Imports: methods, crochet (≥ 2.3.0)
Suggests: data.table, LinkedMatrix, tinytest
Published: 2020-07-08
Author: Alexander Grueneberg [aut, cre], Gustavo de los Campos [ctb]
Maintainer: Alexander Grueneberg <cran at agrueneberg.info>
BugReports: https://github.com/QuantGen/BEDMatrix/issues
License: MIT + file LICENSE
URL: https://github.com/QuantGen/BEDMatrix
NeedsCompilation: yes
Citation: BEDMatrix citation info
Materials: README NEWS
CRAN checks: BEDMatrix results

Documentation:

Reference manual: BEDMatrix.pdf

Downloads:

Package source: BEDMatrix_2.0.3.tar.gz
Windows binaries: r-devel: BEDMatrix_2.0.3.zip, r-release: BEDMatrix_2.0.3.zip, r-oldrel: BEDMatrix_2.0.3.zip
macOS binaries: r-release (arm64): BEDMatrix_2.0.3.tgz, r-oldrel (arm64): BEDMatrix_2.0.3.tgz, r-release (x86_64): BEDMatrix_2.0.3.tgz, r-oldrel (x86_64): BEDMatrix_2.0.3.tgz
Old sources: BEDMatrix archive

Reverse dependencies:

Reverse depends: BGData, EBPRS
Reverse imports: mrMLM, phers
Reverse suggests: gcatest, genio, groupedSurv, lfa, popkin, simtrait, symDMatrix

Linking:

Please use the canonical form https://CRAN.R-project.org/package=BEDMatrix to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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