CRAN Package Check Results for Package rbiom

Last updated on 2026-04-10 05:52:23 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	2.2.1	22.24	301.09	323.33	OK
r-devel-linux-x86_64-debian-gcc	2.2.1	14.71	206.84	221.55	ERROR
r-devel-linux-x86_64-fedora-clang	2.2.1	37.00	451.77	488.77	OK
r-devel-linux-x86_64-fedora-gcc	2.2.1	36.00	433.37	469.37	OK
r-devel-macos-arm64	2.2.1	7.00	69.00	76.00	OK
r-devel-windows-x86_64	2.2.1	33.00	310.00	343.00	OK
r-patched-linux-x86_64	2.2.1	26.15	283.64	309.79	OK
r-release-linux-x86_64	2.2.1	14.25	273.95	288.20	OK
r-release-macos-arm64	2.2.1				OK
r-release-macos-x86_64	2.2.1	17.00	159.00	176.00	OK
r-release-windows-x86_64	2.2.1	30.00	294.00	324.00	OK
r-oldrel-macos-arm64	2.2.1				OK
r-oldrel-macos-x86_64	2.2.1	18.00	163.00	181.00	OK
r-oldrel-windows-x86_64	2.2.1	39.00	373.00	412.00	OK

Check Details

Version: 2.2.1
Check: tests
Result: ERROR Running ‘testthat.r’ [25s/29s] Running the tests in ‘tests/testthat.r’ failed. Complete output: > library(testthat) > library(rbiom) > > test_check("rbiom") Saving _problems/test-read_tree-4.R [ FAIL 1 | WARN 0 | SKIP 32 | PASS 191 ] ══ Skipped tests (32) ══════════════════════════════════════════════════════════ • On CRAN (32): 'test-bdiv_heatmap.r:5:3', 'test-bdiv_ord_plot.r:6:3', 'test-biom_merge.r:11:3', 'test-biom_ply.r:9:3', 'test-biom_ply.r:48:3', 'test-boxplot.r:10:3', 'test-boxplot_build.r:3:3', 'test-cache.r:3:3', 'test-convert.r:5:3', 'test-convert.r:24:3', 'test-convert.r:40:3', 'test-corrplot.r:11:3', 'test-distmat_ord_table.r:6:3', 'test-import_table.r:13:3', 'test-plot_heatmap.r:15:3', 'test-plot_palettes.r:6:3', 'test-rarefy.r:3:3', 'test-rbiom-deprecated.r:3:3', 'test-rbiom_objects.r:24:3', 'test-read_biom.r:3:3', 'test-read_fasta.r:3:3', 'test-s3_methods.r:3:3', 'test-stats_emmeans.r:8:3', 'test-stats_wilcox.r:3:3', 'test-taxa_heatmap.r:5:3', 'test-taxa_map.r:3:3', 'test-taxa_stacked.r:5:3', 'test-taxa_table.r:3:3', 'test-utils.r:3:3', 'test-validate.r:3:3', 'test-write_biom.r:15:3', 'test-write_xlsx.r:3:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-read_tree.r:4:3'): read_tree ─────────────────────────────────── Error in `if (all(tree$edge.length == 0)) tree$edge.length <- NULL`: missing value where TRUE/FALSE needed Backtrace: ▆ 1. ├─testthat::expect_s3_class(read_tree(tree), "phylo") at test-read_tree.r:4:3 2. │ └─testthat::quasi_label(enquo(object)) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─rbiom::read_tree(tree) [ FAIL 1 | WARN 0 | SKIP 32 | PASS 191 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc