CRAN Package Check Results for Package myTAI

Last updated on 2026-04-09 01:58:14 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	2.3.5	62.91	417.81	480.72	ERROR
r-devel-linux-x86_64-debian-gcc	2.3.5	43.78	337.66	381.44	OK
r-devel-linux-x86_64-fedora-clang	2.3.5	103.00	667.48	770.48	OK
r-devel-linux-x86_64-fedora-gcc	2.3.5	131.00	740.92	871.92	OK
r-devel-macos-arm64	2.3.5	17.00	113.00	130.00	OK
r-devel-windows-x86_64	2.3.5	80.00	406.00	486.00	ERROR
r-patched-linux-x86_64	2.3.5	57.58	411.40	468.98	OK
r-release-linux-x86_64	2.3.5	53.64	400.88	454.52	OK
r-release-macos-arm64	2.3.5	16.00	173.00	189.00	OK
r-release-macos-x86_64	2.3.5	48.00	359.00	407.00	OK
r-release-windows-x86_64	2.3.5	63.00	411.00	474.00	OK
r-oldrel-macos-arm64	2.3.5	15.00	177.00	192.00	NOTE
r-oldrel-macos-x86_64	2.3.5	47.00	429.00	476.00	NOTE
r-oldrel-windows-x86_64	2.3.5	83.00	564.00	647.00	NOTE

Check Details

Version: 2.3.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘myTAI.Rmd’ using rmarkdown --- finished re-building ‘myTAI.Rmd’ --- re-building ‘other-strata.Rmd’ using rmarkdown --- finished re-building ‘other-strata.Rmd’ --- re-building ‘phylo-expression-object.Rmd’ using rmarkdown Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating gene variances 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating feature variances of standardized and clipped values 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| | | | 0% | |======================================================================| 100% 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| --- finished re-building ‘phylo-expression-object.Rmd’ --- re-building ‘phylostratigraphy.Rmd’ using rmarkdown --- finished re-building ‘phylostratigraphy.Rmd’ --- re-building ‘tai-breaker.Rmd’ using rmarkdown --- finished re-building ‘tai-breaker.Rmd’ --- re-building ‘tai-gallery.Rmd’ using rmarkdown --- finished re-building ‘tai-gallery.Rmd’ --- re-building ‘tai-stats.Rmd’ using rmarkdown --- finished re-building ‘tai-stats.Rmd’ --- re-building ‘tai-transform.Rmd’ using rmarkdown --- finished re-building ‘tai-transform.Rmd’ --- re-building ‘taxonomy.Rmd’ using rmarkdown Quitting from taxonomy.Rmd:307-311 [unnamed-chunk-13] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `curl::curl_fetch_memory()`: ! Timeout was reached [www.itis.gov]: Operation too slow. Less than 1 bytes/sec transferred the last 600 seconds --- Backtrace: ▆ 1. ├─global taxonomy(organism = "Arabidopsis", db = "itis", output = "children") 2. │ ├─base::as.data.frame(taxize::children(organism, db = db)[[1]]) 3. │ ├─taxize::children(organism, db = db) 4. │ └─taxize:::children.default(organism, db = db) 5. │ ├─stats::setNames(children(id, ...), sci_id) 6. │ ├─taxize::children(id, ...) 7. │ └─taxize:::children.tsn(id, ...) 8. │ └─base::lapply(sci_id, fun) 9. │ └─taxize (local) FUN(X[[i]], ...) 10. │ └─ritis::hierarchy_down(y, ...) 11. │ └─ritis:::itis_GET(...) 12. │ └─cli$get(query = args) 13. │ └─private$make_request(rr, mock) 14. │ └─crul:::crul_fetch(opts) 15. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle) 16. └─curl:::raise_libcurl_error(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'taxonomy.Rmd' failed with diagnostics: Timeout was reached [www.itis.gov]: Operation too slow. Less than 1 bytes/sec transferred the last 600 seconds --- failed re-building ‘taxonomy.Rmd’ SUMMARY: processing the following file failed: ‘taxonomy.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.3.5
Check: examples
Result: ERROR Running examples in 'myTAI-Ex.R' failed The error most likely occurred in: > ### Name: diagnose_test_robustness > ### Title: Diagnose Test Robustness > ### Aliases: diagnose_test_robustness > > ### ** Examples > > # Diagnose flatline test robustness > p <- example_phyex_set > robustness <- diagnose_test_robustness(stat_flatline_test, + p |> select_genes(p@gene_ids[1:30]), + sample_sizes=c(10,20), + plot_result=FALSE, + num_reps=2) Computing: [========================================] 100% (done) Warning in dgamma(c(0.018427722665775, 0.018427722665775, 0.018427722665775, : NaNs produced Error in `purrr::map()`: ℹ In index: 1. Caused by error in `if (ks_result$p.value > max_p_fit_v) ...`: ! missing value where TRUE/FALSE needed Backtrace: ▆ 1. ├─myTAI::diagnose_test_robustness(...) 2. │ ├─purrr::map_dbl(...) 3. │ │ └─purrr:::map_("double", .x, .f, ..., .progress = .progress) 4. │ │ └─purrr:::vctrs_vec_compat(.x, .purrr_user_env) 5. │ └─purrr::map(rep(sample_sizes, each = num_reps), f) 6. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 7. │ ├─purrr:::with_indexed_errors(...) 8. │ │ └─base::withCallingHandlers(...) 9. │ ├─purrr:::call_with_cleanup(...) 10. │ └─myTAI (local) .f(.x[[i]], ...) 11. │ └─myTAI (local) test(phyex_set, custom_null_txis = null_txis, ..., plot_result = FALSE) 12. │ └─myTAI:::stat_generic_conservation_test(...) 13. │ └─fitting_dist@fitting_function(null_sample) 14. └─base::.handleSimpleError(...) 15. └─purrr (local) h(simpleError(msg, call)) 16. └─cli::cli_abort(...) 17. └─rlang::abort(...) Execution halted Flavor: r-devel-windows-x86_64

Version: 2.3.5
Check: installed package size
Result: NOTE installed size is 11.0Mb sub-directories of 1Mb or more: doc 6.1Mb libs 3.4Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64