CRAN Package Check Results for Maintainer ‘Hong Zhang <mt1022.dev at gmail.com>’

Last updated on 2024-05-18 09:58:09 CEST.

Package	ERROR	OK
cubar	1	12

Package cubar

Current CRAN status: ERROR: 1, OK: 12

Version: 0.5.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘cubar.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36504 bytes Input file size = 36630 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27455 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27455 Output IDAT size = 27455 bytes (9049 bytes decrease) Output file size = 27533 bytes (9097 bytes = 24.83% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-6-1.png 288x288 pixels, 8 bits/pixel, 241 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3431 bytes Input file size = 4244 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3079 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3079 Output IDAT size = 3079 bytes (352 bytes decrease) Output file size = 3157 bytes (1087 bytes = 25.61% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-7-1.png 288x288 pixels, 8 bits/pixel, 241 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3340 bytes Input file size = 4153 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2981 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2981 Output IDAT size = 2981 bytes (359 bytes decrease) Output file size = 3059 bytes (1094 bytes = 26.34% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/cubar.Rcheck/vign_test/cubar/vignettes/cubar_files/figure-html/unnamed-chunk-9-1.png 288x288 pixels, 8 bits/pixel, 243 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3321 bytes Input file size = 4140 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2869 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2869 Output IDAT size = 2869 bytes (452 bytes decrease) Output file size = 2947 bytes (1193 bytes = 28.82% decrease) trying URL 'http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa' Quitting from lines at lines 114-126 [unnamed-chunk-10] (cubar.Rmd) Error: processing vignette 'cubar.Rmd' failed with diagnostics: cannot open URL 'http://gtrnadb.ucsc.edu/genomes/eukaryota/Scere3/sacCer3-mature-tRNAs.fa' --- failed re-building ‘cubar.Rmd’ --- re-building ‘non_standard_genetic_code.Rmd’ using rmarkdown --- finished re-building ‘non_standard_genetic_code.Rmd’ SUMMARY: processing the following file failed: ‘cubar.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64