CRAN Package Check Results for Package lme4

Last updated on 2026-03-16 09:51:20 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0-1 83.37 791.81 875.18 OK
r-devel-linux-x86_64-debian-gcc 2.0-1 64.15 515.65 579.80 OK
r-devel-linux-x86_64-fedora-clang 2.0-1 117.00 1268.62 1385.62 OK
r-devel-linux-x86_64-fedora-gcc 2.0-1 163.00 1256.92 1419.92 OK
r-devel-macos-arm64 2.0-1 18.00 170.00 188.00 OK
r-devel-windows-x86_64 2.0-1 91.00 637.00 728.00 OK
r-patched-linux-x86_64 2.0-1 86.29 736.93 823.22 ERROR
r-release-linux-x86_64 2.0-1 78.50 731.81 810.31 ERROR
r-release-macos-arm64 2.0-1 17.00 165.00 182.00 OK
r-release-macos-x86_64 2.0-1 57.00 577.00 634.00 OK
r-release-windows-x86_64 2.0-1 89.00 515.00 604.00 OK
r-oldrel-macos-arm64 2.0-1 16.00 168.00 184.00 NOTE
r-oldrel-macos-x86_64 2.0-1 55.00 689.00 744.00 NOTE
r-oldrel-windows-x86_64 2.0-1 110.00 820.00 930.00 NOTE

Check Details

Version: 2.0-1
Check: tests
Result: ERROR Running ‘AAAtest-all.R’ [146s/169s] Running ‘HSAURtrees.R’ [3s/4s] Running ‘REMLdev.R’ [3s/4s] Running ‘ST.R’ [3s/4s] Running ‘agridat_gotway.R’ [4s/5s] Running ‘bootMer.R’ [7s/17s] Running ‘boundary.R’ [18s/23s] Running ‘confint.R’ [5s/7s] Running ‘devCritFun.R’ [3s/3s] Running ‘drop.R’ [3s/4s] Running ‘drop1contrasts.R’ [3s/4s] Running ‘dynload.R’ [0s/0s] Running ‘elston.R’ [3s/4s] Running ‘evalCall.R’ [3s/4s] Running ‘extras.R’ [3s/3s] Running ‘falsezero_dorie.R’ [3s/4s] Running ‘fewlevels.R’ [0s/0s] Running ‘getME.R’ [3s/4s] Running ‘glmer-1.R’ [5s/5s] Running ‘glmerControlPass.R’ [5s/6s] Running ‘glmerWarn.R’ [4s/4s] Running ‘glmmExt.R’ [7s/8s] Running ‘glmmWeights.R’ [7s/9s] Running ‘hatvalues.R’ [3s/4s] Running ‘is.R’ [3s/3s] Running ‘lmList-tst.R’ [3s/3s] Running ‘lme4_nlme.R’ [3s/4s] Running ‘lmer-0.R’ [3s/4s] Running ‘lmer-1.R’ [3s/3s] Running ‘lmer-conv.R’ [3s/3s] Running ‘lmer2_ex.R’ [3s/3s] Running ‘methods.R’ [4s/4s] Running ‘minval.R’ [3s/3s] Running ‘modFormula.R’ [4s/5s] Running ‘nbinom.R’ [2s/3s] Running ‘nlmer-conv.R’ [3s/3s] Running ‘nlmer.R’ [3s/4s] Running ‘offset.R’ [4s/4s] Running ‘optimizer.R’ [5s/6s] Running ‘polytomous.R’ [3s/3s] Running ‘prLogistic.R’ [3s/3s] Running ‘predict_basis.R’ [3s/4s] Running ‘predsim.R’ [4s/4s] Running ‘priorWeights.R’ [6s/7s] Running ‘priorWeightsModComp.R’ [4s/5s] Running ‘profile-tst.R’ [3s/3s] Running ‘refit.R’ [3s/3s] Running ‘resids.R’ [3s/4s] Running ‘respiratory.R’ [7s/9s] Running ‘simulate.R’ [3s/3s] Running ‘test-glmernbref.R’ [4s/5s] Running ‘testOptControl.R’ [3s/3s] Running ‘testcolonizer.R’ [3s/4s] Running ‘testcrab.R’ [8s/10s] Running ‘throw.R’ [4s/4s] Running ‘varcorr.R’ [3s/4s] Running ‘vcov-etc.R’ [3s/3s] Running the tests in ‘tests/AAAtest-all.R’ failed. Complete output: > if (base::require("testthat", quietly = TRUE)) { + pkg <- "lme4" + require(pkg, character.only=TRUE, quietly=TRUE) + if(getRversion() < "3.5.0") { withAutoprint <- identity ; prt <- print } else { prt <- identity } + if(Sys.getenv("USER") %in% c("maechler", "bbolker")) withAutoprint({ + ## for developers' sake: + lP <- .libPaths() # ---- .libPaths() : ---- + prt(lP) + ## ---- Entries in .libPaths()[1] : ---- + prt(list.files(lP[1], include.dirs=TRUE)) + prt(sessionInfo()) + prt(packageDescription("Matrix")) + ## 'lme4' from packageDescription "file" : + prt(attr(packageDescription("lme4"), "file")) + }) + test_check(pkg) + ##======== ^^^ + print(warnings()) # TODO? catch most of these by expect_warning(..) + } else { + cat( "package 'testthat' not available, cannot run unit tests\n" ) + } Saving _problems/test-resids-82.R [ FAIL 1 | WARN 0 | SKIP 7 | PASS 1766 ] ══ Skipped tests (7) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-eval.R:2:1' • Skipping (1): 'test-covariance_nlmer.R:22:3' • empty test (3): , , • getRversion() < "4.6.0" is TRUE (1): 'test-methods.R:899:3' • testLevel < 2 is TRUE (1): 'test-predict.R:689:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-resids.R:81:5'): weighted residuals ────────────────────────── Expected `head(weighted.residuals(gm1), 3)` to equal `structure(...)`. Differences: 2/3 mismatches (average diff: 0.267) [2] -5.17 - -4.93 == -0.244 [3] -5.65 - -5.35 == -0.291 [ FAIL 1 | WARN 0 | SKIP 7 | PASS 1766 ] Error: ! Test failures. Execution halted Flavor: r-patched-linux-x86_64

Version: 2.0-1
Check: tests
Result: ERROR Running ‘AAAtest-all.R’ [146s/185s] Running ‘HSAURtrees.R’ [3s/4s] Running ‘REMLdev.R’ [3s/3s] Running ‘ST.R’ [3s/4s] Running ‘agridat_gotway.R’ [4s/5s] Running ‘bootMer.R’ [7s/17s] Running ‘boundary.R’ [18s/26s] Running ‘confint.R’ [5s/6s] Running ‘devCritFun.R’ [3s/3s] Running ‘drop.R’ [3s/5s] Running ‘drop1contrasts.R’ [3s/3s] Running ‘dynload.R’ [0s/0s] Running ‘elston.R’ [3s/4s] Running ‘evalCall.R’ [3s/4s] Running ‘extras.R’ [2s/3s] Running ‘falsezero_dorie.R’ [3s/4s] Running ‘fewlevels.R’ [0s/0s] Running ‘getME.R’ [3s/4s] Running ‘glmer-1.R’ [5s/6s] Running ‘glmerControlPass.R’ [5s/7s] Running ‘glmerWarn.R’ [4s/5s] Running ‘glmmExt.R’ [7s/8s] Running ‘glmmWeights.R’ [7s/8s] Running ‘hatvalues.R’ [3s/4s] Running ‘is.R’ [3s/4s] Running ‘lmList-tst.R’ [3s/4s] Running ‘lme4_nlme.R’ [3s/3s] Running ‘lmer-0.R’ [3s/4s] Running ‘lmer-1.R’ [3s/3s] Running ‘lmer-conv.R’ [3s/4s] Running ‘lmer2_ex.R’ [3s/4s] Running ‘methods.R’ [4s/5s] Running ‘minval.R’ [3s/3s] Running ‘modFormula.R’ [4s/5s] Running ‘nbinom.R’ [2s/3s] Running ‘nlmer-conv.R’ [2s/3s] Running ‘nlmer.R’ [3s/3s] Running ‘offset.R’ [3s/4s] Running ‘optimizer.R’ [5s/7s] Running ‘polytomous.R’ [2s/4s] Running ‘prLogistic.R’ [2s/3s] Running ‘predict_basis.R’ [3s/4s] Running ‘predsim.R’ [4s/5s] Running ‘priorWeights.R’ [6s/7s] Running ‘priorWeightsModComp.R’ [4s/6s] Running ‘profile-tst.R’ [3s/3s] Running ‘refit.R’ [2s/3s] Running ‘resids.R’ [3s/3s] Running ‘respiratory.R’ [7s/8s] Running ‘simulate.R’ [3s/3s] Running ‘test-glmernbref.R’ [4s/4s] Running ‘testOptControl.R’ [3s/4s] Running ‘testcolonizer.R’ [3s/4s] Running ‘testcrab.R’ [8s/11s] Running ‘throw.R’ [4s/5s] Running ‘varcorr.R’ [3s/4s] Running ‘vcov-etc.R’ [3s/4s] Running the tests in ‘tests/AAAtest-all.R’ failed. Complete output: > if (base::require("testthat", quietly = TRUE)) { + pkg <- "lme4" + require(pkg, character.only=TRUE, quietly=TRUE) + if(getRversion() < "3.5.0") { withAutoprint <- identity ; prt <- print } else { prt <- identity } + if(Sys.getenv("USER") %in% c("maechler", "bbolker")) withAutoprint({ + ## for developers' sake: + lP <- .libPaths() # ---- .libPaths() : ---- + prt(lP) + ## ---- Entries in .libPaths()[1] : ---- + prt(list.files(lP[1], include.dirs=TRUE)) + prt(sessionInfo()) + prt(packageDescription("Matrix")) + ## 'lme4' from packageDescription "file" : + prt(attr(packageDescription("lme4"), "file")) + }) + test_check(pkg) + ##======== ^^^ + print(warnings()) # TODO? catch most of these by expect_warning(..) + } else { + cat( "package 'testthat' not available, cannot run unit tests\n" ) + } Saving _problems/test-resids-82.R [ FAIL 1 | WARN 0 | SKIP 7 | PASS 1766 ] ══ Skipped tests (7) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-eval.R:2:1' • Skipping (1): 'test-covariance_nlmer.R:22:3' • empty test (3): , , • getRversion() < "4.6.0" is TRUE (1): 'test-methods.R:899:3' • testLevel < 2 is TRUE (1): 'test-predict.R:689:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-resids.R:81:5'): weighted residuals ────────────────────────── Expected `head(weighted.residuals(gm1), 3)` to equal `structure(...)`. Differences: 2/3 mismatches (average diff: 0.267) [2] -5.17 - -4.93 == -0.244 [3] -5.65 - -5.35 == -0.291 [ FAIL 1 | WARN 0 | SKIP 7 | PASS 1766 ] Error: ! Test failures. Execution halted Flavor: r-release-linux-x86_64

Version: 2.0-1
Check: installed package size
Result: NOTE installed size is 27.8Mb sub-directories of 1Mb or more: R 1.7Mb doc 1.7Mb libs 22.0Mb testdata 1.4Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

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